rs46405507 SNP Detail

Summary

• ID
  rs46405507
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121396777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCCGGTT TTGGATGGCA CGGATGCTAT TAATCATTAT
  TCCCCATAGA TACTAGTTGA ACTTCCTACT CAGGCTCCCC ACCTTTCTTC CTATCCTCCC
  M
  CTCCTCTTTG CTAAATTTGG CTTCTCTAGG CCACGCCCGT TTCCATCACT GTGATGTAAA
  GTTCTTCCAG AGAGGCAAGC TTCTGTCTCC ACTGGGCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135724895	ENSMUSSNP3390948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320904169	CHEV_3_121306046	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46405507					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121396777 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	1606 bp downstream
Rr584125	regulatory region 584125	527 bp distal
Rr584126	regulatory region 584126	1903 bp proximal