rs46405013 SNP Detail

Summary

• ID
  rs46405013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97860190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCTGGG GGATGTGATA
  GAACTGGCAC AAGAGAAAAT TAATTTGGTT GGGATCCATG AATGGAGCGG GGGGTAATGG
  GCAAGCCTTG TGGAGGCTGT GTAATCCATC ACTGTACAAG GTTTGCTAGG TTGCCGAGCT
  GCGTGGCACC TTCTGTTTCG GGCAGCATCG TGCCAAGATT AACTCCTGTA GAACCCTGCT
  Y
  TTCTGTATTA GGAGAAAGCA TACGCATAAT AGAATGTGAC TATAGAACAT GTATATTCGC
  AGTCAATAAA AATGCTTCTA TCTGTCCTTC TGTATGTATG GTGTGTGTGT CCATTGTGTG
  CTCTGAAATA AAATCAAATG GGCTTTACCA CAATTTTTTC TCTTTCATCC TAGGGTATTT
  TCCTACCCTT TATTTTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915307	NES16222664	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46405013					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915307	NES16222664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97860190 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635234	regulatory region 635234	813 bp distal
Rr635235	regulatory region 635235	197 bp proximal
Tssr57901	transcription start site region 57901	817 bp upstream