rs46404297 SNP Detail

Summary

• ID
  rs46404297
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148256335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC CTCCTCTCCC CTGACTCCCC
  C
  TCTTTCCTTT TCTTCCAGGA GTCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147994878	ENSMUSSNP1426159	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321417788	CHEV_4_147545987	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46404297					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148256335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	1923 bp distal
Rr604615	regulatory region 604615	258 bp distal
Rr604616	regulatory region 604616	896 bp distal
Rr604617	regulatory region 604617	1698 bp proximal