rs46403125 SNP Detail

Summary

• ID
  rs46403125
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:106726952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT GACTAGCAGA GCAGGTATTT
  C
  CCCCCCTTTA ATTATGGCTT AGAGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133478223	ENSMUSSNP2809470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321886656	CHEV_6_106699985	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46403125					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:106726952 () rs orientation: forward

Symbol	Name	Function Class
Il5ra	interleukin 5 receptor, alpha	954 bp upstream
Rr399801	regulatory region 399801	459 bp upstream
Rr635963	regulatory region 635963	464 bp distal
Rr635964	regulatory region 635964	174 bp proximal
Tssr62367	transcription start site region 62367	1972 bp upstream
Tssr62368	transcription start site region 62368	1938 bp upstream
Tssr62369	transcription start site region 62369	1914 bp upstream
Tssr62370	transcription start site region 62370	1033 bp upstream
Tssr62371	transcription start site region 62371	999 bp upstream
Tssr62372	transcription start site region 62372	785 bp upstream