rs46401661 SNP Detail

Summary

• ID
  rs46401661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41360033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT TATGCTGTCA AGTTTGGAAA
  R
  AAAATTTCTC AGTTAATTCT GTTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600958	NES16305585	PERLEGEN	MM_PANEL2	f	SNP		A		A	A		G
ss144675364	ENSMUSSNP5229796	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322633629	CHEV_8_41992350	CHEVERUD	SCREENING_POP	f	SNP			G			G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs46401661					SNP	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600958	NES16305585	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41360033 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77023	transcription start site region 77023	1376 bp downstream
Tssr77024	transcription start site region 77024	1172 bp downstream
Tssr77025	transcription start site region 77025	1125 bp downstream
Tssr77026	transcription start site region 77026	715 bp downstream
Tssr77027	transcription start site region 77027	386 bp downstream
Tssr77028	transcription start site region 77028	281 bp downstream
Tssr77029	transcription start site region 77029	111 bp downstream
Tssr77030	transcription start site region 77030	904 bp upstream
Tssr77031	transcription start site region 77031	1050 bp upstream
Tssr77032	transcription start site region 77032	1409 bp upstream
Tssr77033	transcription start site region 77033	1672 bp upstream
Tssr77034	transcription start site region 77034	1735 bp upstream