rs46399824 SNP Detail

Summary

• ID
  rs46399824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146046028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATTTCT CCCACACATA
  TAAACAGACA GCAAAAACAA GAGGAATATA TATTCAAATA CACACACACA CACACACACA
  CACACACACA CACACACACA CACATGAACA CTTTGATTTT CCTACTGTTA TTTTATTTTA
  TTTTACTTTA TTTTATTTTT TGAGTAAAAT GTACCTAATG GCCCCTGAGC TTTGCACTCA
  M
  TGATAAGAAA CCACAGACCC TGCCTCGTCC ATATCTCCCT GTGCGCCATG TGAAAACAGT
  CTAGAGCCCC AGGATCTTAT TATGGGACAC CTTGGGAATG TCCTAGTGAT GAGGATATAA
  GTCAAATATG CCCTGTTCCT GTGCTCTGTT TGGTAAAGAT CATAGAGTCA TCTTTCTCCC
  CTCTAGTGGG CGAAGTCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136043325	ENSMUSSNP1627844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321009984	CHEV_3_146003237	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46399824					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146046028 () rs orientation: forward

Symbol	Name	Function Class
Rr587005	regulatory region 587005	1427 bp distal
Rr587006	regulatory region 587006	176 bp proximal
Rr587007	regulatory region 587007	1722 bp proximal