rs46399604 SNP Detail

Summary

• ID
  rs46399604
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GACTGTTTGC CATGTAAAAT GAGGTTCTTG GATAGGAAAA
  AAAATTTTCT TACTGCAAAA AGAAAGATTT CTTCCTGGTA AAATAGTTGG GGTTTTTTTT
  K
  GGGGGGGGGG GAAACGGTGT AGCCCCCCCA TCAAATCACA CACCAGGATT CCCCTTGGAA
  AGAGGATCGG TTGCCATGGT AACCAAACCT TCAGCAGTTT C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146764226	ENSMUSSNP1192595	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46399604					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795715 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	85 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	560 bp distal
Rr559414	regulatory region 559414	816 bp distal
Rr559415	regulatory region 559415	within coordinates
Rr559416	regulatory region 559416	104 bp proximal