rs46395181 SNP Detail

Summary

• ID
  rs46395181
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCCAGC TCCATAGGAT
  CTGATGCCCC TGCCCTTGTA GGGCATCTGT ACTCGTGTGC ACATACCCAC ATAATTTTTA
  AAAAAAAAAA AATTTTTTTT TAAGTGAAGG GGCATTGTAA TGGCAGAAGG CAGCATCAGG
  GGAGAAGCAG TTGGTAGTTG GTTATGCACA CTTTTAATCC CAGCAGTGAG GCAGGCAGAT
  W
  CCTGTGAGGT CAAGGTCAGC CTACATATCA AGTTGCAGGC CAGCCAGGGC TACATAGTAA
  AAGAAAGAGG AAGAAAATTG AGATGCATAG TGTTCTAGTT TGGCTTTCTG TTGCTTTGAT
  AAAACACTAA TAAAAGCCAA CACAGGGGGC TGGAGAGATG GCTCAGTGGT TAAAAAGCAA
  TGGCTGCTCT TCTAGGGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135542929	ENSMUSSNP5995242	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320850256	CHEV_3_100721373	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46395181					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824766 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	233 bp distal
Rr581926	regulatory region 581926	492 bp distal