rs46394278 SNP Detail

Summary

• ID
  rs46394278
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42030798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTGTGGA CTGGGTTTCT GTACTTATAT TACTTTTAAC
  ATCATGACAC TTTTTATAGC AGCATGTACT AAATGGCACC TTAAAATTTC CACATTGAAA
  S
  GAAACTCTTC TTAGTATGAA AACCTTTGCT CAGCCAGGGA CTTCTGGGTT GGAGCACCTC
  TCTCCACACC TCATTTATTT GACTTCATCT CTGACTTTAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395643	NES15895113	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46394278					SNP	C	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395643	NES15895113	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42030798 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	1432 bp distal
Rr576015	regulatory region 576015	1700 bp distal