rs46392087 SNP Detail

Summary

• ID
  rs46392087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99567587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCGGAG AGAGCTTCTC
  TCCTTCCAGG CTCTGCACTT TTTCAGACGC AAGTGAGGCA TATAAGGACA TCTCTCTGGG
  AGGAACAACA TCAGAGAGAG TGTCTTCCTG AAGAGGAGAG GCTATCTGAG AAGGGGTGTG
  AGCTGAAGAG GTGGACGGGG AAGCCTCTAC CTGAGACACA GAGATGAGCT CAGACAGATC
  R
  TTATCCTGGG TGTAGGATGG CTCTTCCGTT GGCGGGATCT TATGCGACAA ACTAGAGTCC
  TGGATATCAG AGGGACTATA GTCCACTTCA GTTGGCCCGT TTTCAGTGAT ATGAAGCACA
  CTGGCACCCA GAGTAGGGTG ATCTGGAGAC TGCCGACTAA AGTCCATAGC AAGAGAATGC
  TCAGGGGATT CCTGGCCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684837	NES15534675	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46392087					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684837	NES15534675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99567587 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	1444 bp downstream
Tssr123696	transcription start site region 123696	1178 bp upstream
Tssr123697	transcription start site region 123697	987 bp upstream
Tssr123698	transcription start site region 123698	837 bp upstream
Tssr123699	transcription start site region 123699	753 bp upstream
Tssr123700	transcription start site region 123700	706 bp upstream
Tssr123701	transcription start site region 123701	681 bp upstream
Tssr123702	transcription start site region 123702	662 bp upstream
Tssr123703	transcription start site region 123703	610 bp upstream
Tssr123704	transcription start site region 123704	554 bp upstream
Tssr123705	transcription start site region 123705	253 bp upstream
Tssr123706	transcription start site region 123706	26 bp upstream
Tssr123707	transcription start site region 123707	145 bp downstream
Tssr123708	transcription start site region 123708	353 bp downstream
Tssr123709	transcription start site region 123709	522 bp downstream
Tssr123710	transcription start site region 123710	1729 bp downstream
Tssr123711	transcription start site region 123711	1935 bp downstream