rs46388900 SNP Detail

Summary

• ID
  rs46388900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29122764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAATAT GCACATAAAA
  GACACCCAAA CAAGTCCATT TGTCTAAAAG ACATTCTGTG CTTCTCTGAA TCTGAACCTA
  TTCATCACAC AGGAGAGAGC TCTTCCAAGG AGAGAAACAG CCTTCTAAGA TGTAACCCTC
  TCCACAGTGT AGAGTCCCAT AAGCTTTGTG CTGCCTCTCT TATATTACCT ATCAAACAAC
  R
  AGGAAAGCCT TTTGCAGAGG CTGTGTAAAG AGTCCCTAGT GAGGGCTACC ATGAAGACAA
  ATGGTTAATG TCTCCTTTCC CAGCTGCTCA GTTAATTACT ATCATACAAA ACATCTTGAG
  GGAAAACACT GCATACAGTT ATTAGCAATT AACCCTCAAC TCAAAAAAAA AAAATCGTAG
  TTCTTACTAA TAATAGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381964	NES15888743	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46388900					SNP	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381964	NES15888743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29122764 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	within coordinates