rs46387878 SNP Detail

Summary

• ID
  rs46387878
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37712096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCG AGTAAATAAT TCTACCCCAA
  T
  ATAACATCCC TGCTTTGTGA CAAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134810413	ENSMUSSNP5267344	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320711577	CHEV_3_37556869	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46387878					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37712096 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	1430 bp upstream
Gm65224	predicted gene, 65224	1556 bp upstream
Rr575532	regulatory region 575532	1222 bp distal
Rr575533	regulatory region 575533	505 bp distal
Rr575534	regulatory region 575534	1622 bp proximal
Tssr28921	transcription start site region 28921	1920 bp downstream