rs46387529 SNP Detail

Summary

• ID
  rs46387529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:96531430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTATTAT GAATGTTTTC
  TAGGATGAAT ATAGAACAAT TGGTCACTTT TGTGTAGTGA ATTACATAAA TCTCTAATAA
  TAGATTTTTT GAAGACTTAG TGTGATAACA AAATGATATT TCCATGCATT ATAAAATAGT
  CTAAAATCAA AGCAAATGGC ATGATCTGAA ATGCAACCAG TGAAGGTAAA ACAAAAAAAA
  W
  TAATAATAAT CCTGTGGGAA ATCAATATTA CCATTGTAGC AGATTTATAT AAAAGCAAAA
  CAAATAGTTA TGTAAATAAG ATACAGTGGT AAAAATTTAT AAGGAGATTT TAGAGTGTTT
  TAAACAGGTA CATTAAAAAT ATAAAGTTGC TGCCCATGTA GCACAGTTAA AAATAAAATC
  AATGCATATA TCAACTCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147073095	ENSMUSSNP5593120	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46387529					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96531430 () rs orientation: forward

Symbol	Name	Function Class
Cyp2j5	cytochrome P450, family 2, subfamily j, polypeptide 5	Intron
Tssr42487	transcription start site region 42487	461 bp upstream