rs46384080 SNP Detail

Summary

• ID
  rs46384080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GAGGGTCCTG AGGGACTGGG
  Y
  GAGCACATCT CAGTCAGCCT AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011485	PARCsnp_1.19821	PARC_SEQ	INBRED	f	SNP			C	T
ss120014489	PARCsnp_1.09858	PARC_SEQ	INBRED	f	SNP			C	T
ss146193517	ENSMUSSNP54704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125682	CHEV_1_174418966	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46384080					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316402 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1678 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1942 bp distal
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			852 bp proximal
Rr423589	regulatory region 423589			1732 bp proximal
Rr423590	regulatory region 423590			1911 bp proximal