rs46373652 SNP Detail

Summary

• ID
  rs46373652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90567632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGTTTC TAAAGTAAGA
  TGGAAATTTA CATGGAGGGC CAAGGATATG TATGTCTAAG TAGTCCTAGT CAAGGTGTGG
  TCCTGCACAT CACTGATCCT GTAAGGCAGT CGGACAAGTT GTTAGAATGG TGGGAAATCT
  TTTTTTCTAG AGACAGGTCC CCCTTTGGCT GGTGCCTTTC ACTTCTCCCA CCATGACATC
  K
  TTGGGGAACT TTCCATTTCG TTGGAGTCCA TTGTTTTAAT AGTCTGATAG TCAAATTGAG
  AGCCACAAAA TGTTTCGTTA GAATGTCTTC ATTTCTGCTG AGTCAGTTAT GTTCTCAGCA
  CACACTTGTG GCTGCTGCTG TCAGACAACC CTGCTGCCCA CTTAGAGGGA CTGCTATCTG
  GTGGTTATTG TTCATGGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135478350	ENSMUSSNP12161	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46373652					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90567632 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	1656 bp downstream
Tssr946	transcription start site region 946	335 bp downstream
Tssr30264	transcription start site region 30264	665 bp downstream
Tssr34247	transcription start site region 34247	889 bp upstream
Tssr34248	transcription start site region 34248	877 bp upstream