rs46373363 SNP Detail

Summary

• ID
  rs46373363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:78938662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATCTTC TTAGTAGATC
  ACCAACACAG GAGGGACAAG GAAATGGGTT TCCAGGGTCT CATCACTACT TCTGGGAATG
  GCAAATGTAA AAGGATACTT TCTAAGTACC AAAGGTGTAC ATTTTTATCA ATGTTTGTAG
  GGAAAAGTCA GACAATGTCA TCCCCAAAAG AACTCAGATT GCCTAGAATA TTCTTTCTTC
  W
  GTGTTGCAAG GGGACACATG CAATAAAACA CCGGAGTCAA AACAGGAGGC CTCAGGGAAA
  CTTTCCTATC AGGATTGAGA GCGGGATGTC ACACTGTATT GAGATCTATT ATGGGAAGTG
  GTTAGGATGT GGTGGCATCC ACTGGAGGAT TAGAATTTGC ATTTGAAGAG AGTTTTAACT
  TATCCTAAAT ACCCATCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52475644	NES15658102	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46373363					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52475644	NES15658102	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:78938662 () rs orientation: forward

Symbol	Name	Function Class
Gm39202	predicted gene, 39202	within coordinates
Rr665703	regulatory region 665703	910 bp proximal
Rr665704	regulatory region 665704	1148 bp proximal
Rr665705	regulatory region 665705	1320 bp proximal
Tssr78111	transcription start site region 78111	1259 bp upstream
Ttc29	tetratricopeptide repeat domain 29	1264 bp upstream