rs46368827 SNP Detail

Summary

• ID
  rs46368827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCCTGGG AGTGAGACTT AAATTGTAAG ATCTAACCAT
  GTTTACATGT TATTTTCATT TTGGGCACTA GATGGCGATA AAATCTCTGT TGCAAATTAA
  Y
  AGCTCTTAAA GCCACCCTAT GTTACAATCA CGTAGATGTC TAAGTTGCTA AGTTTTTCAA
  ACTACTTTGA ACTGACATCA TGTTTCCTTT GCTTACAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134617941	ENSMUSSNP3589461	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320667848	CHEV_3_14874605	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46368827					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939665 () rs orientation: forward

Symbol	Name	Function Class
Rr374551	regulatory region 374551	1079 bp upstream
Rr397608	regulatory region 397608	within coordinates
Rr573714	regulatory region 573714	within coordinates
Rr573715	regulatory region 573715	19 bp distal
Rr573716	regulatory region 573716	503 bp proximal
Rr573717	regulatory region 573717	1834 bp proximal