rs46361132 SNP Detail

Summary

• ID
  rs46361132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117654451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGCC TATCCTTTTG
  CCACTTCTGG TTTTGTTCCA TTTACAAGCC CTGAGCACTG CACGCAGCAC AAGCCCACAA
  TTCTGTCCCT GCGGAGTCTC TCCTGGTCTC TAGTGGGTTC TCGCCTTGGT CTCCATTCTC
  TGTAAGCCTC TGTAACTTTC CTTCCCTGAG GGAGGCCTTG GGCTCTGTGC TTTAACAGCC
  R
  CCTGCTAATT CCTGCCAACT GTTTGCCCGT GCTGCCTTCT CCACCTGGTC CCTCCTTGAT
  GTTCCTGCAC AGTTTTATTG GGGGTAACCA TGGTTTTCGA TTTAAATATT TTTTGTCACA
  TATGATGTCT TTCATAGACT TACACTGCTC TGACACTATC CTGAGATTCC AAATCTGGAT
  TTTCAAATGA TTTGTCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60933663	NES16203037	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46361132					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933663	NES16203037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117654451 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	1717 bp downstream
Rr637348	regulatory region 637348	1761 bp distal
Rr637349	regulatory region 637349	1878 bp distal
Rr637350	regulatory region 637350	1839 bp distal
Rr637351	regulatory region 637351	643 bp distal
Rr637352	regulatory region 637352	26 bp distal
Rr637353	regulatory region 637353	821 bp proximal