rs46345870 SNP Detail

Summary

• ID
  rs46345870
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93964547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGAGC CTAATGTGTC
  TGTCTTACTC TGAAGTGTTC CTTGTCCGAG GTACTTAATA GCTAGGGTTT GCCTCACACC
  TGTGCTGTTT GGGAATTCGC TCTTACCTAC TTGAGAATCT TGCAGGCTTC CTTCCCATAC
  TGTCTGCTGG TTTGGGACAG AGCAGGTGTA TTGCATGTGG TGGGAATCTG AACACCAGCG
  S
  AGGCTGCTCT CTACTTTCTT ACATACATTA TAGTTATGGG TGAGGCTATT TTTTTTTTAA
  AGTCAGAATG ATGTTGAGTT TATAGATCGA ATAAGAAGAG CCACCATGCT TGTGGTATGG
  AGCCACCGTG AGCAGCACTC TGATCTGTGG GCAGGCATGT CTGTACCCTG CTTCTCCTGC
  AGCCACCTCA CATACTTCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60768986	NES16411078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46345870					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60768986	NES16411078	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93964547 () rs orientation: forward

Symbol	Name	Function Class
Pdcd1	programmed cell death 1	1480 bp downstream
Rr366973	regulatory region 366973	1646 bp downstream
Rr416095	regulatory region 416095	361 bp distal
Rr416096	regulatory region 416096	1742 bp distal
Tssr13055	transcription start site region 13055	1334 bp upstream