rs46339149 SNP Detail

Summary

• ID
  rs46339149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108729587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGCTGA GAGAAACTCG
  GGCTTTTTAC ATAATGTTTA GAAATAAGCA TCTGAGAAGT GTGGAAACAT GCTGTCCTGG
  TTTACTCAGC CCCATGCTTA AATGCTGGCA TTAGCACCAT CCTCGGAATG TGGAAAGTTG
  TCTAAAAAAT GAGTCACCTG GCACCAAAAA AACATTTATG CACAGACTTC CACCCCACAC
  M
  CCCCACACTC TCCCCCTCCC CGCAACCCAT ATCTTAGCAT CAACAAAACG GCTCTGCTGG
  CTTGTAAATT CTGAGAAGTC TGGGAGAACA AGGGTTCCCC CAAGTGGTGT GTGGTTATTC
  GTCCTCTACT ACAAAGCATA GGTTTCCTGA AACCTCACTG TTACCCTTGT ATTTTAAAGA
  TGTTTTAGGG TGCATGGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133508743	ENSMUSSNP3794623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss321893984	CHEV_6_108702620	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46339149					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108729587 () rs orientation: forward

Symbol	Name	Function Class
Rr636193	regulatory region 636193	91 bp proximal
Rr636194	regulatory region 636194	1279 bp proximal