rs46339050 SNP Detail

Summary

• ID
  rs46339050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143007187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTCAGCAA AGGCAGGTAA TCCTCTAAGT GTGAGGCTAG
  CCTGATCTAC AGAGCAAGCT CCAGGATGGC CAGGGCTACA CAGAGAAGTG CTATCTTGAA
  R
  AACAAAAACC ATAACAACAA CAACAATAAT ACAGCTGAGT ATGGTGATAC ACACCTGTAA
  CCCCGGTCGG TGCTGGTGGA GGGAAGAGAG AGGGTTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147778640	ENSMUSSNP267051	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46339050					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143007187 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	1312 bp distal
Rr604184	regulatory region 604184	125 bp distal
Rr604185	regulatory region 604185	215 bp distal
Tssr44446	transcription start site region 44446	1702 bp upstream