rs46335844 SNP Detail

Summary

• ID
  rs46335844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATACAAACG CTCCTACTTT TTAACTCTAA AATTAATTAC
  TTGTATGGAT TTTGTTCAGA GAGGATGTCA TGTAGCCTAA GCTGGCCTAG AACTCACTAT
  R
  CAGATGTGGA TGACTGCCTT GATACCCCTG CCTCTTCTTC CCATGGGTTT TGTGTGCATA
  TTCTTTATTT AGCTTGCGAG CTATCTTCTT CCACTTAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135760812	ENSMUSSNP1231463	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320918215	CHEV_3_122936203	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46335844					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			763 bp proximal
Rr584474	regulatory region 584474			1393 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant