rs46327443 SNP Detail

Summary

• ID
  rs46327443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76870334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACACAT TCTCCGGGCT
  AGGGAGCCGG ATGTGTGCCT TCCAACAAGG CACTGGGGCT GAGGAAAGAG ATTGATTCTG
  GGCATTTGAG CCAGTGGCAA AGATACAGTC AACACTCAGC CACCACAATG GGAGAAGGGC
  ATTGGCGTTT GTTTTCCCCC CTTCCTTAAT TAAAAGGAAC CTTCCTGTTT CAAGATAAAA
  M
  GAAAGTGGGC CTTGGAAAGA AGTTTGTGAA CAGTTGTATT CCACACTTCT TACCCACCTC
  CACCCCTACC CCCATCTCTC ACACGGGTGC TAGGCTGGTC AGAAAGGACT GTGTAGTGCC
  CCTCCCCGAC ACTACAACCC ACCCGGGCTG CCAAGAATTT CTTTCAGTTG CCTGGAAGAG
  GTTGCAAGTT AAGAAGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52375946	NES15271689	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46327443					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52375946	NES15271689	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76870334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			674 bp distal
Rr434376	regulatory region 434376			1806 bp distal
Rr434377	regulatory region 434377			1826 bp distal
Rr434378	regulatory region 434378			1222 bp distal
Rr434379	regulatory region 434379			1483 bp distal
Rr434380	regulatory region 434380			1336 bp distal
Rr434381	regulatory region 434381			105 bp distal
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr94205	transcription start site region 94205			1753 bp downstream
Tssr94206	transcription start site region 94206			1242 bp downstream
Tssr94207	transcription start site region 94207			1216 bp downstream
Tssr94208	transcription start site region 94208			1199 bp downstream
Tssr94209	transcription start site region 94209			1185 bp downstream
Tssr94210	transcription start site region 94210			1329 bp upstream