rs46327381 SNP Detail

Summary

• ID
  rs46327381
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136036867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTGCA GACGAAGGTC
  AGAGGAAGAA AGTGAGTGTC CTGCTCTTCC ACCCTCCGCC CTGGAGCTAA ACTGGCAGCA
  AGCTACAGCA ATTCTCCGGT TGCAGTCTAC ATCAGCACTG GAGTTTACAG GTGCATGCGG
  TCACGCCAGG CTTTTTACTC AAGTGGATGG AGATTCACAG TCAGGTTTTT TTTTTGTGGG
  G
  GGGCGGGGTT TCGAGACAGG GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTCTG
  TAGACCAGGC TGGCCTGGAA CTCAGAAATC CGCCTGACTG CCTCCCGAGT GCTGGGATTA
  AAGGCATGCG CCACCACTGC CGGGCCACAG TCAGGATTTT AAACTTGCAT TTGAGCCGTC
  TCTCCAGCCC CTAGGACAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147565099	ENSMUSSNP6054746	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46327381					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136036867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	728 bp proximal
Gm13013	predicted gene 13013	1670 bp upstream
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	1386 bp upstream
Rr367756	regulatory region 367756	28 bp upstream
Rr602347	regulatory region 602347	896 bp proximal
Rr602348	regulatory region 602348	1480 bp proximal
Tssr39700	transcription start site region 39700	1380 bp upstream
Tssr39701	transcription start site region 39701	1396 bp upstream
Tssr39702	transcription start site region 39702	1435 bp upstream