rs46319053 SNP Detail

Summary

• ID
  rs46319053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACTTAG GTGGCCTTTT
  TGGGGGAGTC TATTTCTATT TACCCCTGAA ACAGATAGCC ACTCTAGGCC AAAGAAAATT
  TGCTTCCAGT CCAGCTTAGT GAATGGGACA AACTTATTGG TGTTGTCTGT AGGGACATGG
  GTGGCTTGGG CAATTGTATC ATCAAAAAGC CTACCCCAGC ATGGTGACAA GTGCTCAAAG
  Y
  TAGTGACATC GCTGGTGTCC CCATTAGTTG ACAGTCCACC TCCAAGCAGC AGACAGGACG
  GTTTGCAGGG GTGAAGCAGG AGGGAGGGAT GGAGTGTTGG AACGTCAGGG GAGGGTCTAA
  TGACCCCACA CACAGGGACT GGTACAGGCA CGATTTTTTG AAGGCCTCCT GTAGATAATC
  GAAGCTGTTG GAAAGAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147553226	ENSMUSSNP4373900	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321353455	CHEV_4_135451945	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46319053					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623341 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	626 bp distal
Rr602184	regulatory region 602184	332 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	842 bp proximal
Rr602187	regulatory region 602187	965 bp proximal
Rr602188	regulatory region 602188	993 bp proximal
Tssr39650	transcription start site region 39650	835 bp downstream
Tssr39651	transcription start site region 39651	634 bp downstream
Tssr39652	transcription start site region 39652	554 bp downstream