rs46317153 SNP Detail

Summary

• ID
  rs46317153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145573865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATAAAT CTTTTTAAAA
  AATGAGTTGG GCTGGAAATA TGGCTTAGCA GGTGGGAGCA CTGACTGTTC TTCCAGAGGT
  TCTGAGTTCA ATTCCCAGCA ACCACATGGT GGATCACAAC TATTTCTTTT GGGATCTGAC
  ATCCTCTTAT CTTGTGTCTG AAGAGAGTGA CAGTGTACAC ACATACATAA AAGAAATAAT
  R
  TTTTTTTTTA AATGGGTCAA AATAAGTCCT ATCTGAAAAC TAAAAAGTTG TTCTGGGCTG
  GCGAATGGTT CCATTGGTAA AGAACCTGGC AAAACCTGAC TGCCTGAGGT TTGGATTCTC
  AGAACCTATA TAAAAGGCTG GATCCAGGTT AGAGAGATGG CCTACTTGTT ATGAGTACCT
  GTTTCTCCTG CAGAGAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363599756	MGP_WTSI_4_145437198	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	A	A	G	G	A	A	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs46317153					SNP	A	G	G	A	A	G	G	A	A	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599756	MGP_WTSI_4_145437198	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145573865 () rs orientation: forward

Symbol	Name	Function Class
Gm13236	predicted gene 13236	1659 bp downstream
Rr604403	regulatory region 604403	830 bp proximal