rs46315697 SNP Detail

Summary

• ID
  rs46315697
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAAGGACTTT GGATTCCCGC AGGAGAAGGT GGATGCCCAG
  CAGATCAAGA AGGCTCAAGC CATCCCTGTC CTGAGTGAGC TGACCCAGCA GATCCTGAAC
  M
  TCTTCACATC AAAGGACTCA TCTGCTGCAT GGAATACAAC CCTCCTAGAC TCATTCTGCA
  ATGACCTCCA CCAGCAGCTC AATGACCTGC AAGGCTGTCT G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146941453	ENSMUSSNP3388739	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46315697					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768591 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	263 bp proximal
Ifna1	interferon alpha 1	Coding-NonSynonymous
Rr595123	regulatory region 595123	849 bp proximal