rs46312217 SNP Detail

Summary

• ID
  rs46312217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27282383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGACTGAC TCCGGGCTAG
  AAGCTTTACA GGTTCCCACA CCTTGCTAGT TATCAAGCCT AGATAGAAGG AAACTGATAA
  CAGCCACACA GGCAGACAGG GAATGCTCCA ACTGCTTCTA TGAACCCAGG TTCATCCAGT
  TCTCCCTTTC CCCTGCCTTC CTCCCATGCG TGGCTCTCAA CCCCCTTGCC CTACTGTAGA
  Y
  CTGGGAACAG AAAACAGGAA CCTGGGTTCC CAGCACTGCA GTCATGTAAG GCTGCAGTGT
  GGACACCAAG GAAATTGGGC TGACTTGGGA TGGAGACCTC ACAGGCGTGT CCAGGGAACA
  GTTTAGACAG TTGGACTAAA AGGGCCTCTG GTGTTCAGCA GGGAATCCTC CTGTTGTAGT
  CTAAGTGAAG AGATGCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134703023	ENSMUSSNP853491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46312217					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27282383 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			within coordinates
Rr574373	regulatory region 574373			847 bp proximal
Rr574374	regulatory region 574374			870 bp proximal
Tssr28616	transcription start site region 28616			932 bp downstream