rs46303664 SNP Detail

Summary

• ID
  rs46303664
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108706854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG AAGTGCAAAC ATGCTTAGCA
  A
  GATGAATGCC AGCCATCCCA GAATA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252978	CHEV_4_108522262	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46303664					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108706854 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	1038 bp upstream
C030043A13Rik	RIKEN cDNA C030043A13 gene	1209 bp upstream
Cpgi14566	CpG island 14566	754 bp distal
Kti12	KTI12 homolog, chromatin associated	245 bp downstream
Rr398384	regulatory region 398384	1687 bp downstream
Rr597230	regulatory region 597230	1862 bp distal
Tssr38317	transcription start site region 38317	1762 bp downstream
Tssr38318	transcription start site region 38318	1732 bp downstream
Tssr42741	transcription start site region 42741	1252 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron