rs46297598 SNP Detail

Summary

• ID
  rs46297598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52473934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTTATAT CTAATTGGAT CTTTTCAATT AACTGAGCTT GAAATGTTTT TTGCTTTGCC
  TTTCAAACAA GTTTTGTTTT TTGTTTTTGT TTTTGTTTTT GTTTTTTTTT TTGGCAACTG
  AGTTAAAATG CTGGGGTATA TGGTAAAGGA GAACATTTGG CAGTGTTTAG ACTAGTAAGC
  R
  ACTTAATCAC TGTCAGCTTT TCTGAGACTC CAGTGTTCTC ATCTGCTGAA AGGCAGGTAG
  GACCGATACA GTCAAGCTGA CAGGGTGTTG ATTCTTGCCC TGTGAGCTTG CTGTTTGAGA
  GGCCCTCAGG CAAGGCACAA CATGACTCCG CAAATGTCAA ATGGGCACAG TAACAACGTG
  TATTACATAA AACTGTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60409008	NES15911282	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46297598					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60409008	NES15911282	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52473934 () rs orientation: forward

Symbol	Name	Function Class
D3Mit364	DNA Segment, Chr 3, Massachusetts Institute of Technology-364	154 bp distal
Rr576544	regulatory region 576544	948 bp proximal