rs46288164 SNP Detail

Summary

• ID
  rs46288164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90616827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCACACC AACACGATCT TTAGAACTTC AGCCTTTAGG
  GATGTGCCCA GGAAAAAGTC AATAATCTCA GATTCCCTGA TGGTCAGGAA GAACAGGTGG
  W
  TCACCTCCCA GGGTCTTGAT CTTCATGTCC TTAACCAGGC AGCTCAGTTG GTGATGGAAA
  TCCATTCCTT GCCTTTGGCT TTACCTCCAT GAGCCCTGTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423946	NES15930009	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46288164					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423946	NES15930009	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90616827 () rs orientation: forward

Symbol	Name	Function Class
Gm42579	predicted gene 42579	within coordinates
Rr580435	regulatory region 580435	679 bp distal
Rr580436	regulatory region 580436	750 bp distal
Rr580437	regulatory region 580437	189 bp proximal
Rr580438	regulatory region 580438	448 bp proximal
Rr580439	regulatory region 580439	709 bp proximal