rs46281898 SNP Detail

Summary

• ID
  rs46281898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77004189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATCTCA GTAATCCTGT
  CTCTCTTTGT ATTCATGTCT GTCTACCTGG AAGCCATGCC CATGTGGGGA GTCTGAGGTA
  GACTTGGGGG AAGGAGAAGG AGTTTGGGGG GAGGGGGAGG AGGGGGTTCT TGTTTCTTCT
  GCCTGCCTTC CAGGTCTGCT CCCACTGCAG TAGGGCCTAA TTCCTCAATC TTCAATTAGC
  Y
  GATTGGAGCT CAACTATGTG TCCAAAACTG CAGGCCTCTG CAGGTGGCGG GATGTAGCCC
  CCAGGGCTGT CTGTCATTCC TGGGAGAAAT CCTGAAATGG AGGGGGGCAC ACCAGGCATC
  CGGGGGCTTC AGAGTCCGCT GCCTGCCTTC TTCAAGGTTT GACACCTCAG GCTGAGGGGA
  GTCCACTTCA GAAGAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52373564	NES15269450	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46281898					SNP	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373564	NES15269450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77004189 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	1838 bp upstream
Cpgi1754	CpG island 1754	1647 bp distal
Gm67721	predicted gene, 67721	1152 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	1705 bp distal
Rr434421	regulatory region 434421	1499 bp distal
Tssr94211	transcription start site region 94211	1709 bp downstream
Tssr98227	transcription start site region 98227	1831 bp upstream
Tssr98228	transcription start site region 98228	1799 bp upstream