rs46280886 SNP Detail

Summary

• ID
  rs46280886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51918231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCTCCCT CAAGCTCCCA GAGCAAGCCA GTGGGAGCAT
  GGAAGGCCCA GGCTTCCTGA CTTCAACCCA TGCATGGCGC TGAACCAGGA CTGGCTACTA
  Y
  GACTGTGACT GCTATGACCA GCCTGTCTCC TCTCTGTGTG CACATTTGCA CCAGCATTTC
  AGGGATGTTC ACGTTTCTCA TGAGCTACCT CATACTTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411343	NES15908542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46280886					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411343	NES15908542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51918231 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	1242 bp distal
Rr576437	regulatory region 576437	266 bp proximal
Tssr876	transcription start site region 876	1589 bp upstream
Tssr33242	transcription start site region 33242	1715 bp upstream
Tssr33243	transcription start site region 33243	1653 bp upstream
Tssr33244	transcription start site region 33244	1629 bp upstream
Tssr33245	transcription start site region 33245	1570 bp upstream