rs46278894 SNP Detail

Summary

• ID
  rs46278894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119345839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACTCCA GAAGAGGGCG
  CCAGATCTCG TTACGGATGG TTGTGAGCCA CCATGTGGTT GCTGGGAATT GAACTCAGGA
  CCTCTGGAAG AGCAGTCAGT GCTCTTAACC ACTGAGCCAT CTCTCCAGCC CACGTCATTC
  TTTTTAGTTT ATTTGTTTAA GATTTATTTT ATGTATAAGT TCACTGTTGC TCTCTTCAGA
  Y
  ACACCAGAAG AGGGAGTCAG ATTCTATTAC AGCTGGTTGT GAACCACCAT CTGGTTGCTG
  GGAATTGAAG TCAGGGCCTT TGGAAAAGCA GTCAGTACTC TTAACTGCTG AGCCATCTTT
  CCAGCACCCC ACACTATCCT TTTTTAAGGC AAAAATCTTA GTATAGGCCT ATGGCTTTTT
  ATAATATGCA CTAGTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147334446	ENSMUSSNP5867679	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320475845	CHEV_2_119341094	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46278894					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119345839 () rs orientation: forward

Symbol	Name	Function Class
Exd1	exonuclease 3'-5' domain containing 1	1147 bp downstream
Gm33412	predicted gene, 33412	within coordinates
Rr563519	regulatory region 563519	176 bp distal
Rr563520	regulatory region 563520	within coordinates
Rr563521	regulatory region 563521	1532 bp proximal