rs46277287 SNP Detail

Summary

• ID
  rs46277287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124379448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTAAAGC TAGATACCAA
  CAACAAGAGA AAAAGCAGGG ACTATACAAA CTCACAGAAA CTGAACATCT CACTACTGAA
  TGAAAACTGC GTCAAGACAG AAATCAAAAA CGAAACATTT TTTAAAGAAT TTAATAAACA
  CAGACCATGC CCAAACCTAT AGAACATACA GAAGGCAGTT CCAAAAGACT AAGTTCCTAC
  R
  TCCCTACATC AAAAAACCCT GTAGACATTT CATTTTAGTG ATTTATTGAA ATTCCTGGAG
  GCTCTAGAAC AACAGGAAGA AATAATACCC AAAGAGAGTT AAGGTGAAGA ATAGTCAAAT
  GTGGGCTGAA ATCCTTGAAA TAGAGGTCTG ATGTCCTCTG CTGGACGATG TGGGCACATG
  CCCTCACATG TGGCCATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135790699	ENSMUSSNP3252325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320929391	CHEV_3_124288717	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46277287					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124379448 () rs orientation: forward

Symbol	Name	Function Class
Rr584593	regulatory region 584593	148 bp proximal
Rr584594	regulatory region 584594	1816 bp proximal
Rr584595	regulatory region 584595	1928 bp proximal