rs46276785 SNP Detail

Summary

• ID
  rs46276785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145191990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTTTTGT TACCAGATGT ATGACTTTGA TTCAGCTGAT
  GACTTTGATT CCTGGTTTGA TACAAATAAT TGCCTTGGGG ATCAAAAGCT AGTTGAGAGG
  Y
  TTCATATGGT TTTGTGTCCA TTCCTCCTTC GTCGAATTAA AGCTGATGTT GAAAAGAGTT
  TGCCTCCAAA AAAAGAAGTA AAAATCTATG TGGGTCTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147859579	ENSMUSSNP6862313	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46276785					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145191990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	1137 bp distal
Gm65281	predicted gene, 65281	within coordinates
Gm70672	predicted gene, 70672	1419 bp upstream
Rr377358	regulatory region 377358	633 bp downstream
Rr604377	regulatory region 604377	1206 bp distal
Rr604378	regulatory region 604378	1019 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates