rs46269154 SNP Detail

Summary

• ID
  rs46269154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCCAAA ACTTAGGTGG
  CCTTTTTGGG GGAGTCTATT TCTATTTACC CCTGAAACAG ATAGCCACTC TAGGCCAAAG
  AAAATTTGCT TCCAGTCCAG CTTAGTGAAT GGGACAAACT TATTGGTGTT GTCTGTAGGG
  ACATGGGTGG CTTGGGCAAT TGTATCATCA AAAAGCCTAC CCCAGCATGG TGACAAGTGC
  Y
  CAAAGCTAGT GACATCGCTG GTGTCCCCAT TAGTTGACAG TCCACCTCCA AGCAGCAGAC
  AGGACGGTTT GCAGGGGTGA AGCAGGAGGG AGGGATGGAG TGTTGGAACG TCAGGGGAGG
  GTCTAATGAC CCCACACACA GGGACTGGTA CAGGCACGAT TTTTTGAAGG CCTCCTGTAG
  ATAATCGAAG CTGTTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147553221	ENSMUSSNP685438	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321353454	CHEV_4_135451939	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46269154					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623335 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	620 bp distal
Rr602184	regulatory region 602184	326 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	848 bp proximal
Rr602187	regulatory region 602187	971 bp proximal
Rr602188	regulatory region 602188	999 bp proximal
Tssr39650	transcription start site region 39650	829 bp downstream
Tssr39651	transcription start site region 39651	628 bp downstream
Tssr39652	transcription start site region 39652	548 bp downstream