rs46265755 SNP Detail

Summary

• ID
  rs46265755
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152986847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTCCATC TTCTCTCATT
  CTGGCTTCAG GTGGTTGATG CAGTTCTCAG CTTCCTGCTC TGGCTGCCAT GCATTTCCAC
  CATGAAGACA GACTCTGGAC CCATGAGCCA ACATGAACTC TCTCGTCTAT TTGTTGCTTT
  TGGTCATGGT GTTTTATCAC AGCAACGGAA AAGTAAGATG CTCAATAGAT CCTTTAGGGA
  W
  GGGCTGTAGG AGGAATAATT GCTTCTTTAT TTATAAACCA TGCAAGTATT CGTGTAAGAG
  TTTGAAGAAA CAAATATATA GGCAAATTTG AATAATTTAG TATAACGGTA TATTGGAAAT
  ATACAATCAC CATTTCAAAA TTCATAATTT TAATTTCTTC TAGAATTTTT TAAGCTTTTG
  AACTCTGACA GTTGTGTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136107386	ENSMUSSNP2707680	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss321030485	CHEV_3_152944174	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46265755					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152986847 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			918 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant