rs46255536 SNP Detail

Summary

• ID
  rs46255536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65836083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGTGG TACACCGTCA
  TACATGCACA CAAACCACAT GCACACATTT TTTTTTAATT AAAAAAATTA AAACAAACTA
  GACAAGGTTG CGTCTTGCTG TATCTACTTC AGAATTAGTT GACATTTTAT GCTTCCCCCT
  AAGGAAACAA ACAATACTGC TCTTATTTTT TCCTTGTAGA TTTAACATCC CCTTCACTTT
  Y
  TCAGAATGAA ATTGAGCGCC AGTTATCTGT ACAGTAAGAA AGCTCCTCAT AGTGTGCAGA
  GTCCAGCAAG GACTTTGCCC TTCTTCCTGG TTTTCCTCTC TCCTGGGTGT GTGTGCCCCT
  GAGAGAAGGG TAGGGGGAGA ATGACACTCA GGAGAGGGAA AGTGGGGGCA GGAGGCACAC
  ACACACACAC ACACAGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60417553	NES15922211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs46255536					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417553	NES15922211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65836083 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	374 bp upstream
Gm65138	predicted gene, 65138	within coordinates
Rr577758	regulatory region 577758	803 bp distal
Rr577759	regulatory region 577759	507 bp distal
Rr577760	regulatory region 577760	within coordinates
Rr577761	regulatory region 577761	705 bp proximal
Rr577762	regulatory region 577762	1006 bp proximal
Rr577763	regulatory region 577763	1799 bp proximal
Tssr33471	transcription start site region 33471	693 bp downstream
Tssr33472	transcription start site region 33472	753 bp downstream