rs46255415 SNP Detail

Summary

• ID
  rs46255415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108447701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAGCAGAC GGCATATTTC CAATCACTGT TCATAGGGAT
  GTGCACAGGA GCATAGAGAA GACAAACAAC CTCATTGCAG TAATCACTAC AACCATTTTT
  Y
  CATTTTTGTC ATCTGTGGAG TTATCATGCG CGCTGTCCAT TGATGTGAGA GGAGAGCTTC
  ATCCTAGCTA AGCCGCACGG AAGGCAGAGC GAGTGCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133503008	ENSMUSSNP1146609	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46255415					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108447701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35165	predicted gene, 35165			within coordinates
Gm44101	predicted gene, 44101			within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1			Intron
				Noncoding-Transcript-Variant
Rr636115	regulatory region 636115			1370 bp proximal
Rr636116	regulatory region 636116			1792 bp proximal
Tssr62385	transcription start site region 62385			909 bp downstream
Tssr62386	transcription start site region 62386			1796 bp downstream