rs46253659 SNP Detail

Summary

• ID
  rs46253659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125198507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGTATA CATACCTGTC
  AGTATGTAGA AGTTATATTT GCATTGTATA TAGAATGTAT TGCCCTGCTG TAAAAAGGGA
  ACTGAACAGC AGATTAATTT TAAACAGTTA CTCTGACATT TGCACCAAAA CACCTCCCTG
  GATAACAGGT TTGTCCTGTT TCTACTGGAC CTACTAATTT TGCAAACTCA GCCTTCAGTC
  R
  TAACTGTGGC TGGTGTTTAA ATGTTTCCTA AGAAGTATTA CTTAGAATGT GGCATGCAAA
  TTGCCCAAGA TGAGAACTCT TCTCCTTGGG ACATAAGATT TATAGGTGTT CTCTGTTTTG
  ATGGAATTTT GAGAGAAACA GCTGGCACAC ACATTTGAAA CTGAACGACA CTGGCATATG
  CTGTTTATCA GGAAATAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135807833	ENSMUSSNP2042393	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320936166	CHEV_3_125107776	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46253659					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125198507 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	772 bp distal
Rr584609	regulatory region 584609	154 bp distal
Tssr31558	transcription start site region 31558	727 bp downstream
Tssr31559	transcription start site region 31559	518 bp downstream