rs46252800 SNP Detail

Summary

• ID
  rs46252800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102277247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCATTCA CTCCTCTCCA
  GCCCGTAGAA AGTGTTCTTA TAACCACAAT GAAAAGGCTG GATCATGGGA GGATTCAAAG
  CGTCTGGGGA TTTGACTCAG CTGAGGAATG ATACTCCACT TTAATAAATC CCCGTTGTGG
  TTGCTGAGTG CCAGGTACTC TTCTGAGAAG CTCGTCAATA TTTACTCATT GAGTTCACAC
  Y
  GTCAGCCTCT GGGTTTCAGA GGTCTTTCCT AGCTACAGTT GTAGTTAGAA GGCTGAGAAG
  TGTCGAGATG TGCTAAAATC ATTTGTTTTT CTTTCCGACT TGAAGACAGA AGGGTGAGCA
  TACTTAATAG AGTTTAGAAC TGTGTCACCA ACAGAGTGAA TTAATCAACA GTCAAACCCA
  AGGAGAAAGG TCAACTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147112238	ENSMUSSNP7001471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320437724	CHEV_2_102287059	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46252800					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102277247 () rs orientation: forward

Symbol	Name	Function Class
Rr561693	regulatory region 561693	922 bp proximal