rs46249895 SNP Detail

Summary

• ID
  rs46249895
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145098360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTCCAG TTACTCGCCC
  TGCCTCCAGT CTGGCATTCC TTCAACCCCA CGGTGATGAT GCCAAAGGGG GGGGGGGAAT
  TCTATGGAAA GTATACATCT CAGCTGCCGC TCTTGGGCTT GGTCCTTATG AGCTCTGCAG
  TGCATCTCTC TGAAGACATG CACGTCTTTA TTTTTAACAC ATGGTCCTCT GCGCTCCAAC
  M
  ATCTCCTGAC TCCTCAGCAC ACACTCGTGC TCACCATTAC CTTTTCAAGG TTCCGCTCTA
  GCCAGACTTC ATAAATTAAC AAACCACCCT GTGCCGGTTC AGACCTCCCA GCTCCTTGGT
  TGCAGTTCTT TTATCAGGAT GTAACCTTCT TTCCTGCACT TTCTCGTCAG CCAGCCAGTG
  TCTGGGCATC ACACACAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61094044	NES16614210	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46249895					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094044	NES16614210	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145098360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			629 bp upstream
Rr586774	regulatory region 586774			174 bp distal
Rr586775	regulatory region 586775			within coordinates
Rr586776	regulatory region 586776			1599 bp proximal