rs46247561 SNP Detail

Summary

• ID
  rs46247561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85986281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG TGTATTTTGA AACAGATTTG
  Y
  AGTTTCTTAA CAATGCTATT TAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133353896	ENSMUSSNP5866462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321845448	CHEV_6_85959293	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46247561					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85986281 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	within coordinates
Gm33319	predicted gene, 33319	1390 bp upstream
Gm66378	predicted gene, 66378	within coordinates
Rr633312	regulatory region 633312	745 bp proximal
Rr633313	regulatory region 633313	841 bp proximal