rs46244388 SNP Detail

Summary

• ID
  rs46244388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:4762594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCAAGTGGA ACTTCAACTG CCAGTTCTTC ATCAAGGATC TTTACCAGGA
  Y
  GTTCTGTGTC TCACTATGTT TGACAGAGAC CAGTTTTCTC CAGATGGTAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61339092	NES16947240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46244388					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339092	NES16947240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4762594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam228a	family with sequence similarity 228, member A			1076 bp downstream
Gm53750	predicted gene, 53750			347 bp upstream
Itsn2	intersectin 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr112576	transcription start site region 112576			251 bp downstream
Tssr112577	transcription start site region 112577			217 bp downstream
Tssr115645	transcription start site region 115645			336 bp upstream