rs46240444 SNP Detail

Summary

• ID
  rs46240444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCCTG GGAAGGTTGC
  ATGAGCACTG GCAGACCCTC AGCCAACACA GGAGTGCTCA GTGAGCCTGA CCTCCACGGG
  CCCTGTGCTG TGTGACGGCA GGTATGAAAC TCTGTTCAGT TTCTACCGTA TCCTCATCCC
  TGGGCTCCCT GTCAGGGGCA CAGAGGAAGT CTATGTTGGT TTCTGTGGGA GTCATGGCTC
  R
  CAGCCCAGCA TCTTAATTGT CTTTAGTTTG AAAATAACTG CCTCACTGGA CAATGGCATG
  TCTCTACTCT GTTTTAGAAG AAAATTTTGC TTTGTGTAAG CTAATGTTTA ACTTTAATAA
  TCTTTTCATT AGTCCTAAAG ACTGTGCTAA TTATTCAAAG TAGTGCTTCA TCTTTTGTGT
  GTATTGTTTT CCCAGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398363	NES15902908	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46240444					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398363	NES15902908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332703 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1257 bp upstream
Rr575940	regulatory region 575940	1290 bp distal
Rr575941	regulatory region 575941	1371 bp distal
Rr575942	regulatory region 575942	773 bp distal
Rr575943	regulatory region 575943	within coordinates