rs46239932 SNP Detail

Summary

• ID
  rs46239932
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCTCTGC GGGCACCAGG
  CTCACACACT GTGCACCTAT CTACACACAG GCAAAACACT CATGTATATA AAATAAAAAC
  AAGTACGTCA GTTTGACCCA TGTGCTCGGG CAGAACATTA TGGTAACAGG GACTTGTGGT
  GCATTGTGGG ACATACCGGA AGCAGAGAGG TCTTGCACCG ACTTTCTCCC GTGCCACCTC
  W
  GTTCCCCTTG GGTTCCTACC CCATGCTGGG GCGCTGCTCA CATTTGCGCT GGGGCTTCCC
  CACTCGTGCG AATTCCACCT GGAAATTCCC TCACGGACAC ACCCAGAGTC TGTGCCGCAC
  CGGCCTCCCA GGGATTCTAA ATGCAATCAA GCTGGCAGTG AAGACGATCC ACCACACATT
  TAGGATCAAG TTATTTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876626	ENSMUSSNP7228943	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320958780	CHEV_3_127671893	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46239932					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762624 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1946 bp upstream
Gm65460	predicted gene, 65460	within coordinates
Rr52	regulatory region 52	1006 bp proximal
Rr584913	regulatory region 584913	1999 bp proximal