rs46237786 SNP Detail

Summary

• ID
  rs46237786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32242836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCCAGGA CCTACCCACA
  TGCCTTTGCC AAAAGCATTA TAGAAAGGAC GGGATGCATG TACTCTATCT AAATGAGCAT
  TATGCCAATA CACACATTTT CCCTTACTCT CTAGTGGTTC CTGAAAAAGC TACATCCCAA
  GTTCATTGAA ATAGCCTACT CCCCTTTGTT TGGCAAAAAG TTGGCATTCA AACCAGAGCC
  S
  GTCAGAAGCC ACAGTCCACA CAGCCACAGC TTCAATGCGC CCCCTAGCGT CATGGTATGC
  AAGTGACCAA ACCACACCAC AAAGGAGATG GCCTTTATGG TCCTCTTAAT GTATTTTCAA
  TTATAGAATA CTCATTGAGA ATACCCATCT AGAATATTTC TTTGATAATT TCTCATTTCT
  GATAATATTC TAATTCTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60382924	NES15880795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46237786					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60382924	NES15880795	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32242836 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	Intron
Rr574931	regulatory region 574931	within coordinates
Rr574932	regulatory region 574932	34 bp proximal
Rr574933	regulatory region 574933	470 bp proximal
Rr574934	regulatory region 574934	1344 bp proximal