rs46236009 SNP Detail

Summary

• ID
  rs46236009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38343197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCAAAA GCATTCACTC
  AACAAACAGG AAATGAAAAA CAAAACAAAA AACAAAACAA AACAAAAAAT CAACTCATGC
  CCTTGTGGAA TAAATGCCCA GACCAAGAGA CAAAAATACA GCATAGCCAG CCCTGTTTAA
  AATCTCTGTA GTTAAAGTTG ATTGGTTGTG TTCCTAAAAG TCATTAAAAT AACTTCTAAA
  W
  ATAAATTGCC TTGGCACAGA AATACTTTCT TAGGTAAGTA TTTATCATTT CTTCAGGGAA
  AAAAAATTTC TTGTTGACCA GTTGCACAGA AGTACTTTGC CTTGCCTTCT AAACGCAGAA
  AGAGGGGGAG GGGAGGGGGA GGTGGGAAGA GGAAGGATCA TTTTCCCTCT GTGTGTGTAA
  GTAATGAGAG CAAAGGAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
ss60391339	NES15888529	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
rs46236009					SNP	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391339	NES15888529	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38343197 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	61 bp proximal