rs46234868 SNP Detail

Summary

• ID
  rs46234868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9464948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAGGTT TATTTACTTC
  CAAAACACAA GACTTAATCT TTCAGCCTTA GTCTGACAAC TCCAACCCCA CCCCTGGCCC
  CCCAAGATAG GGTTTTTCTG TGTTCCCCTG ACTGTCTGGA CACTTGCTCT GTAGGCCAGG
  CTGGCCTCAA ACTCAGAGCT CTGCCTGCCT CTGCCTCCAG GGTGCTGGGA TAAAAGGTGC
  Y
  CCCCACCCCC CCACCCCCGG CTGGTATTTT TGTTTTATGT GTATACACAG GCTTCATATG
  TAGATGCCAG TGAGGGCTTA AAAAAGGTAT AGAATTCCCT AGTTTGGGAA TTGTGAGCTG
  TGCAAAGTGG GCACCAAGGC CCTCTGGAAG AGCAGAATGT CCTTAACCTC CAAGTTGTCT
  GTCAGTCCCC AACTCGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320650884	CHEV_3_9399888	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46234868					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9464948 () rs orientation: forward

Symbol	Name	Function Class
Rr374488	regulatory region 374488	within coordinates
Rr573417	regulatory region 573417	1351 bp distal
Rr573418	regulatory region 573418	252 bp proximal
Rr573419	regulatory region 573419	463 bp proximal